10        20        30        40        50        60        70        80        90       100       110       120

                            ....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|

                                 I                    II         II         TEMPLATE                            III                 III          I   

structure                      (((((                ((((((     ))))))      CAACCCCAA                         ((((((((            ))))))))     ))))))

Tetrahymena thermophila     AUACCCGC----UUAAUUCAU-UCAGAUCUGUAAUAGAACUGUCAUUCAACCCCAAAAAUCUAGUGCU-GAUAUAACCUUCACCAAUUAGGUU----CAAAUAAGUGGU-AAU--GCGGG

Tetrahymena malaccensis     AUACCCGC----UUAAUUCAU-UCAGUUCUGUAAUAGAACUGUCAUUCAACCCCAAAAAUCUAGUGCU-GAUAUAACCUUCACCAAUUAGGUU----CAAAUAAGUGGU-AAU--GCGGG

Tetrahymena pyriformis      AUACCCGC-----AUAUUCAU-UCAAAUCUGUAAUAGAUUUGUCAUUCAACCCCAAAAAUCUAGUGCA-ACUAAUACCUUCGCCAAUUAGUGU----AUAAUUAAUGGUUCUC--GCGGG

Tetrahymena vorax           AUACCCGC-----ACAUUCAC-UCAAAUCUGUAAUAGACUUGUCAUUCAACCCCAAAAAUCUAGUGCA-AAUAUUACCUUCGCCAAUUAGGUA----CAAUUAA-UGGUUCUC--GCGGG

Tetrahymena borealis        AUACCCGC-----AAAUUCAU-UCAGGUCUGUAAUAGAUCUGUCAUUCAACCCCAAAAAUCUAGUGCA-AAUAUUACCUUCACCAAUUAGGUA-----UAAUCAAUGGU-AUC--GCGGG

Tetrahymena australis       AUACCCGC------AUAUCAU-UCAGACCCUUUAUGGAACUGUCAUUCAACCCCAAAAAUCUAGUGCA-AAUAUUGUCUUAAUUACUUAGGCUAAAAGAAAUAAGUAUU-AAA--GCGGG

Tetrahymena silvana         AUACCCGC-----AAAUUCAC-UCAAAUCUGUAAUAGGUUUGUCAUUCAACCCCAAAAAUCUAGUGCA-AAUAUUACUUUCGCCAAUUAGGUA-----UAAUAA-UGGU-AA---GCGGG

Tetrahymena pigmentosa      AUACCCGC--------AUCAU-UCAGAUCUAUUAUGGAGCUGUCAUUCAACCCCAAAAAUCUAAUGCA-ACUACUGCCUUAACUAUUUAGGCA--UUAUAAUAAAUAUA-AAA--GCGGG

Tetrahymena hyperangularis  AUGCCCGC--------AUCAU-UCAGAUCUAUUAUGGAGCUGUCAUUCAACCCCAAAAAUCUAAUGCA-A-UACUGCCUUAACUAUUUAGGCA--UAAUAAUAAAUAUA-AAA--GCGGG

Tetrahymena capricornis     AUACCCGC-----AUUUUCAU-UCAGAUCUUUAAUGGAGCUGUCAUUCAACCCCAAAAAUCUAGUGCA-ACUACUGCCUUAACUACUUAGGCA-----AAAUAAGUCGU-AAA--GCGGG

Tetrahymena hegewishii      AAACCCGC-----AUACUCAU-UCAGAUCUGUAAUGGUUCUGUCAUUCAACCCCAAAAAUCUAGUGCU-ACUACUGCCUUAACUACUUAGGCA-----AAAUAAGUUGG-AAA--GCGGG

Glaucoma chattoni           A--CCUCCUG-GUAGAUCCAU-UCAGGAUUAAUGAAAUCCUGUCAUUCAACCCCAAAAAUCUUGUCAA-AUUAUUGCCU-CGUCUUUUGGGCA----ACAACAAAAGUC-ACGCAGGAGG

Tetrahymena paravorax       AAUCCCGCUAUUGCAUUCCAUUUCGA---------------GUCAUUCAACCCCAAAAUUCUAGUACACACUAAAGCUU---GCCUUUGGGCA-----UAUCAGGGGC------AGCGGG

 

                                    130       140       150       160       170         

                            ....|....|....|....|....|....|....|....|....|....|....|...

                                           IV                        IV                

structure                   )    ((((((((((  (((((((((        ))))) ))))) ))))))       

Tetrahymena thermophila     -ACAA-AAGACUAUCGACAUUUGAUAC-ACUAUUUAUCA-AUGGA-UGUCUUAUUU-U

Tetrahymena malaccensis     -ACAA-AAGACUAUCGACAUUUGAUAC-ACUAUUUAUCA-AUGGA-UGUCUUAUUU-U

Tetrahymena pyriformis      -ACAA-AAGACUAUCGACAUUUGAUAC-ACUAUUUAUCA-AUGGA-UGUCUUAUUU-U

Tetrahymena vorax           -ACAA-AAGACUAUCGACAUUUGAUAC-AUUAUUUAUCA-AUGGA-UGUCUUAUUU-U

Tetrahymena borealis        -ACAA-AAGACUAUCGACAUUUGGUAC-ACUAUUUAUCA-AUGGA-UGUCUUAUUU-U

Tetrahymena australis       -ACAA---GGC-AUCGACAUUUGAUACAAAUAUUGAUCA-AUGGA-UGUCUUAUUU-U

Tetrahymena silvana         -AC---AAGAC--UCGACAUUUGAUAC-ACUAUUUAUCA-AUGGA-UGUCUU-UUU-U

Tetrahymena pigmentosa      -AC----GGAC-AUCGACAUUGGAUCCUAAUAUUGACCA-AUGGA-UGUCUU-UUUUU

Tetrahymena hyperangularis  -AC----GGAC-AUCGACAUUGGAUCCUAAUAUUGACCA-AUGGA-UGUCUU-UUUUU

Tetrahymena capricornis     -AC---AAGGC-AUCGACAUUUGAUACAAAUAUUGAUCA-AUGGA-UAUCUUAUUUUU

Tetrahymena hegewishii      -AC---AAGGC-AUCGACAUUUGAUACAAAUAUUGAUCA-AUGGA-UGUCUUAUUU-U

Glaucoma chattoni           -UUCA--GGUG-UUCGACGUAAGAUAC-ACUAUUUAUCUUAUGGAAUGCCAAGUUU-U

Tetrahymena paravorax       AGAAUUUAGAAUUUCGACAUGUGGUAC-ACUAUUUAUCUCAUGGAGAUUCUAAUUU-U